rs29961337 SNP Detail

Summary

• ID
  rs29961337
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40139598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCCCACA GAGCCAGAGA
  ACAGCCTTCT CAAAAGGAAG TCACACCCAC AGATTCTGGG AGTGTTGACA GTCACAGCAG
  CCAGCAGCCC TAGCTCTTAA CAGAGGGAGA CAGAAGTGTG AGTGCCCACT CAGTATGGAT
  GGCTCTTCTG ATGAAAAAGG AACCATTCTG TAGACAGTCT TTCAGGAAAA ACTAATATCG
  Y
  CATCATTAGA AGGAAAAATG TGGGTTATAC TTGAACAAAA CAATCTCATT CAAAGTGAGG
  ATTTTCATAG ATTTCTCCTT TGAGAATGAA GCCAGGAATA ACCAGGATAA AATGGTGGGC
  GGTAGACCCC ACACCTTTAT CCCTGTTTTG TCCTTGATTT TTATGCATTA TGCTTGATCT
  CCATAGATTC AGAGATTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss49586363	NES12859864	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs29961337					SNP	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49586363	NES12859864	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40139598 () rs orientation: forward

Symbol	Name	Function Class
Rr575791	regulatory region 575791	1662 bp proximal