rs29961378 SNP Detail

Summary

• ID
  rs29961378
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:48388074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGCCCTT CTCCTTTTGG
  GTAAAATGAC TTAGTAGATT TTATGGATTG TCCACAACCC ACTTTGGAAA TGACTGCAAC
  TTTGGACCCC TATGAATTCT CCCCTCCAGC AAGGTGATGT TGGCAAGGAA GCATGATGGG
  AAGCCAAGAA CAGATTAGAT AGGAACCATT AATGAAACTG GGAATAAAAG GAGGATGGGT
  R
  GTACCCAGAG GTAATTCCTA GAAGAGAAAA ACCAGCCTAT CCAGTCTAAG AGCCTGGTAG
  GGGATGAAGA ATTAAGTTGC AGGCAGAACT GGAAAGCTGG GGAGTAGATA AGCACCAAAG
  CAGGCAGCTG CAAGTGGAGA TGACTCAGGG AGGGTAGCTT CGGGGTCCAG GACCAGCAGG
  GCAGATAAAG CCTTACTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45380253	mCV24995281	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss146519326	ENSMUSSNP3180115	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29961378					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:48388074 () rs orientation: forward

Symbol	Name	Function Class
Gm39809	predicted gene, 39809	within coordinates
Rr373140	regulatory region 373140	within coordinates