rs29961453 SNP Detail

Summary

• ID
  rs29961453
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72719010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC TCCAGAGTGC TAAGATTGCA
  K
  ATTCGAGTCA CCACGTCCAG ATAGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45879205	mCV25135593	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
ss133286971	ENSMUSSNP22395	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29961453					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72719010 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17550	CpG island 17550	1161 bp distal
Gm31249	predicted gene, 31249	1990 bp upstream
Gm67726	predicted gene, 67726	within coordinates
Rr632291	regulatory region 632291	439 bp distal
Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)	within coordinates
Tssr57163	transcription start site region 57163	1993 bp upstream