rs29961889 SNP Detail

Summary

• ID
  rs29961889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:35906699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTTTTTAAG ATTTATTTAT TATATGTAAA TACACTGTTG ATGTCTTCAG ACACACCAGA
  AGGGGCATCA GATCTCATTA CAGATGGCTG TGAGCCACCA TGTGGTTACT GGGAATTGAA
  CTAAGGGCCT TTGGAAGAGC AGTCGGTGCT CTTAACCACT GAGCCATCTC TCCAGCCCAG
  GTAGTAAATC TTGTACTAAA ATGAAGCAGG GTCTTTGCAC AAAGAAGTTT GATCAAAAGA
  AAAACTGTGT AAGGGATAAG AACAAAGTAA GAAACATCTA AGTAACATGT ATATGTATTT
  Y
  TAAGACTTTA GTAGTCTTTA TGGAGTCTAA TGGAGCATTA TCAATTTGAA ATGGTATTGA
  ATTAGACCTG TAAAGATTGT CCCCCAAAGC TCGGAAAGGG GAGTTTGGTT TGTGAAATTT
  TGTAGAGATT CTTTTTTTTT TTTTTTTTTT TTAAGGTGGA GTCTCACTAG CTCTGGCTGG
  CTTGGAACTT TTAACTATGG TGTAGACCAG GCTGGCCTCA ACTCCATGAC CCACTTGCCA
  CTGCCTTTGA AGGGCTGAGA TTAAACCATC AAGTTAATAG CTTTTAGAGT TTCTGTTAAT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39632578	mCV23294426	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29961889					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35906699 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9842	CpG island 9842	1153 bp distal
Rr393530	regulatory region 393530	1401 bp downstream
Rr535948	regulatory region 535948	860 bp distal
Tssr150556	transcription start site region 150556	1975 bp downstream
Tssr150557	transcription start site region 150557	1936 bp downstream
Tssr150558	transcription start site region 150558	1905 bp downstream
Tssr150559	transcription start site region 150559	1692 bp downstream
Tssr150560	transcription start site region 150560	1515 bp downstream
Tssr150561	transcription start site region 150561	1481 bp downstream
Tssr150562	transcription start site region 150562	155 bp upstream
Ube2d2a	ubiquitin-conjugating enzyme E2D 2A	Intron