rs29962419 SNP Detail

Summary

• ID
  rs29962419
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109746670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCG GAGGCTTCTG AAATACTAAC
  Y
  AGACCAGGAG TGAGATGATC TTGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45380071	mCV23138394	ABI	CRAMUS_MOUSE	f	SNP		C	T	C
ss147206123	ENSMUSSNP2107353	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320456102	CHEV_2_109756482	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29962419					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109746670 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	1143 bp proximal
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	1322 bp upstream
Rr373672	regulatory region 373672	1966 bp downstream
Rr397176	regulatory region 397176	1033 bp upstream
Rr562509	regulatory region 562509	832 bp proximal
Rr562510	regulatory region 562510	1333 bp proximal
Rr562511	regulatory region 562511	1438 bp proximal
Rr562512	regulatory region 562512	1477 bp proximal
Rr562513	regulatory region 562513	1865 bp proximal
Tssr19307	transcription start site region 19307	1246 bp upstream
Tssr19308	transcription start site region 19308	1271 bp upstream
Tssr19309	transcription start site region 19309	1314 bp upstream
Tssr19310	transcription start site region 19310	1354 bp upstream
Tssr19311	transcription start site region 19311	1398 bp upstream