rs29962635 SNP Detail

Summary

• ID
  rs29962635
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:62764226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATGTCCA GATGTCCTTA
  GGATAATGGA GAGTGTGGTT TGTTCTGGCA CAGTCCAGGT TACAATCTGG ATTAAGTCCT
  CGTCAGTTCA CTCCTGTCCA GACCCTAGAT CCCTTTTCTT TTCTCTGGGA AATCAAATTA
  CCCAATTGGA GGTGTGGCTT CAGCTGGGAA CCCCTGAAGT CGAAACAGAG CCAGTCTCTG
  Y
  GGTATAAGAG GATGCCATGT GCTGGCTCAG GAAGAGGGAC CCTTGGGTTG ATTACTCATG
  ACATTGGGAC AGATTTACTG CCTGCCCACC ACAGAAATAT CCCCATTCTC CAAGGATCGG
  GTGAGCATTA GTATTTTTCT GTATTGCAAC AACCCTCCTA ATGACAGAAA CAGACCCACC
  TCTGGGAGTT GGTGCAATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47399825	NES11048722	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29962635					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47399825	NES11048722	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:62764226 () rs orientation: forward

Symbol	Name	Function Class
Nrp2	neuropilin 2	within coordinates
Rr412041	regulatory region 412041	within coordinates
Tssr6998	transcription start site region 6998	729 bp upstream
Tssr6999	transcription start site region 6999	948 bp upstream
Tssr7000	transcription start site region 7000	1244 bp upstream
Tssr7001	transcription start site region 7001	1330 bp upstream
Tssr7002	transcription start site region 7002	1411 bp upstream
Tssr7003	transcription start site region 7003	1443 bp upstream
Tssr7004	transcription start site region 7004	1598 bp upstream
Tssr7005	transcription start site region 7005	1658 bp upstream
Tssr7006	transcription start site region 7006	1786 bp upstream
Tssr7007	transcription start site region 7007	1883 bp upstream
Tssr7008	transcription start site region 7008	1906 bp upstream
Tssr7009	transcription start site region 7009	1955 bp upstream