rs29962641 SNP Detail

Summary

• ID
  rs29962641
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:62764982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGAGATC CCAGAGGGCC
  AGCATCTCGC CCCATGTAAC TCTGTGTAAT TCTCCCATCT AATTACACCG GCAGGCTGTC
  TTAAGAAATT CTGAGGGACT GTGAGATAGA TAAAGGTGTG GAGGGATAAA GCCTAGAAGG
  GGAGATAACA TGTCAAGACA TTAGTCTTTT CTACAGAGGG ATTTGTGTTT CCCTGTAGTC
  R
  TGAGGCCTGT AGAAAAAAAT CCGAACTCTT TGTTGTCTGT CTTATTGGTG AGGAGATTTA
  GACCCTGACG AGAGATACTT AAGAGATAAC TTAATTCCAT TTTCCCCATT CATGCCTAGG
  TAAATTATCA CACACATACA GCCCTTGTCT TTTAGGAAAA AAACCCAAAA CCCTCATAAT
  CGCCCTTCAT TATGAGACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47399831	NES11048725	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29962641					SNP	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47399831	NES11048725	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:62764982 () rs orientation: forward

Symbol	Name	Function Class
Nrp2	neuropilin 2	Intron
Rr412041	regulatory region 412041	264 bp distal
Tssr6998	transcription start site region 6998	13 bp downstream
Tssr6999	transcription start site region 6999	192 bp upstream
Tssr7000	transcription start site region 7000	488 bp upstream
Tssr7001	transcription start site region 7001	574 bp upstream
Tssr7002	transcription start site region 7002	655 bp upstream
Tssr7003	transcription start site region 7003	687 bp upstream
Tssr7004	transcription start site region 7004	842 bp upstream
Tssr7005	transcription start site region 7005	902 bp upstream
Tssr7006	transcription start site region 7006	1030 bp upstream
Tssr7007	transcription start site region 7007	1127 bp upstream
Tssr7008	transcription start site region 7008	1150 bp upstream
Tssr7009	transcription start site region 7009	1199 bp upstream
Tssr7010	transcription start site region 7010	1298 bp upstream
Tssr7011	transcription start site region 7011	1342 bp upstream