rs29962891 SNP Detail

Summary

• ID
  rs29962891
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12476474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATGTCCCT GAGCCCGCAG
  TCGCCAGGAC TCACCCCGGT GGTAGTAAGC GCTTTGCTCC GACTTGTGTC CCCTGACGGA
  CGCCGTCCGG TTCCCGGAGC CGCCACAGGC AGAGGGCGGG GTCAGCCCGC GGCCGTTTCC
  GCGAGAACGA CTGCAGGGGC GGGGCGTCCG AGTGCTGCGA GCTGGGGCTG TTGGGCTCTT
  M
  ATGTCACACA CGCAGACCTA TGGCTGGCTG TGGGAGTGGC TGGCTGGGGT TGGGGTGTGG
  CTCACCTCAC GTGCTGGAAG CCCCCAGGTT GATTTCCACC CAGCTCTGCA CAAATCGGTC
  GGGGTGCACC CCTGTAGTTC CAGCCCTGCG AGGTGGAGGC AGGAGGACCA CAAGTTCAAT
  GTCATACTGG AGAACTTAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss39136500	mCV22708132	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	A
ss148681961	ENSMUSSNP6021674	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs29962891					SNP	C	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12476474 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5278	CpG island 5278	within coordinates
Lgals8	lectin, galactose binding, soluble 8	within coordinates
Rr281011	regulatory region 281011	within coordinates
Rr369646	regulatory region 369646	857 bp downstream
Rr369647	regulatory region 369647	335 bp downstream
Tssr118345	transcription start site region 118345	896 bp downstream
Tssr121453	transcription start site region 121453	480 bp upstream
Tssr121454	transcription start site region 121454	176 bp upstream
Tssr121455	transcription start site region 121455	73 bp upstream
Tssr121456	transcription start site region 121456	44 bp upstream
Tssr121457	transcription start site region 121457	20 bp upstream