rs29963306 SNP Detail

Summary

• ID
  rs29963306
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132657410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGACAGA TTTTTCCCAC
  TGGGATCCAG AGAATAAGAC TGCCTACCTG CAAGCCATAC TATGTGTAAG AGATCTTTCT
  TATCTCCCTT TTCTCTTACT GAGGAAGTTG GATTTATGAA GAAAGTGGGG AGCTGGGAAG
  AGAGTCAGAC ATAAGAGATA CGAATGTGAA AGGTTGGATA AATTCTGTAA GACTAGTGAG
  R
  CTCTTCCCCC GCCCCCCAAG AATCCTCGGG AAAGCACCCT CCTGAGTGGG AGTATCAAGA
  ATGGAATTCT TGGGAAGAGA ATTTGGCGCA GAAGGTAGAA TAGAAAGTTG GGGAATGAAA
  GGTAGAGGCG AGTACTGTAC CCGTAAGCCA AGGATGCGGC AGGATCCCGG TGGGAAGGCC
  TCAGTGATAG GAAGACCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45381987	mCV23920753	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss147623034	ENSMUSSNP5605303	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29963306					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132657410 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12310	CpG island 12310	136 bp proximal
Mcm8	minichromosome maintenance 8 homologous recombination repair factor	651 bp upstream
Rr397334	regulatory region 397334	448 bp upstream
Rr565537	regulatory region 565537	554 bp proximal
Rr565538	regulatory region 565538	662 bp proximal
Trmt6	tRNA methyltransferase 6	within coordinates
Tssr20335	transcription start site region 20335	647 bp upstream
Tssr20336	transcription start site region 20336	658 bp upstream
Tssr20337	transcription start site region 20337	679 bp upstream
Tssr26490	transcription start site region 26490	488 bp downstream