rs29963345 SNP Detail

Summary

• ID
  rs29963345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20369559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG CCGGTCCACG CGGTAGGACC
  Y
  CCGTTTCTAC CTGCTTTGTA CTTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39137032	mCV27590388	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss148761287	ENSMUSSNP6053147	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss324281240	CHEV_13_20277258	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29963345					SNP	C	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20369559 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5309	CpG island 5309	within coordinates
Elmo1	engulfment and cell motility 1	within coordinates
Rr270987	regulatory region 270987	1159 bp distal
Rr270988	regulatory region 270988	359 bp distal
Rr270989	regulatory region 270989	242 bp proximal
Rr281054	regulatory region 281054	within coordinates
Rr403595	regulatory region 403595	25 bp downstream
Tssr118580	transcription start site region 118580	400 bp downstream
Tssr118581	transcription start site region 118581	378 bp downstream
Tssr118582	transcription start site region 118582	88 bp downstream
Tssr118583	transcription start site region 118583	25 bp downstream
Tssr118584	transcription start site region 118584	14 bp upstream
Tssr118585	transcription start site region 118585	27 bp upstream