rs29963371 SNP Detail

Summary

• ID
  rs29963371
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:5350274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGCACTT GAAAGGACAC
  AAGATGAAGG ATTTTCCCCT AAGGACATGA CATGCATGTA TTGGTTCACC TTACATCGAG
  TAGAGAGAAA CACACCAAAA AACGTCTGGT GGTGTGCTTC AGTTTCTTAC CACTTTCATG
  GGCTTGGGCT GATTGGCGTA GTGATATCAG CTGAGACAGA CACATATGCT GAGGTAAGAC
  W
  TGTGCTAAGG CAGGTCCCAT GGAGGATATG TGATATTTGG AGAGAGTATA AAAAGGACTT
  GACCAACAGT GATGGAGACA GAGCTTGGCT TGTTTATAGA ACTAGCTGTG CAATCCTTGT
  AGGTCTGGAA TCTTTGCTGA TCTTCACTTC CCTGAGAGAG GCACAGCTGA GAACTTCTCC
  TGGCATTCAT TCCTTCTGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39632800	mCV25013861	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A	A
ss146577990	ENSMUSSNP4079174	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A		A
ss325518187	CHEV_18_5350272	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29963371					SNP	T	T	A	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:5350274 () rs orientation: forward

Symbol	Name	Function Class
Gm50064	predicted gene, 50064	within coordinates
Gm52372	predicted gene, 52372	1125 bp downstream
Gm58537	predicted gene, 58537	within coordinates
Rr533383	regulatory region 533383	1163 bp distal