rs29963378 SNP Detail

Summary

• ID
  rs29963378
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64303607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGGTCTC CTGCTGAGAC
  TAAAAAGACA GGGTGCTAGT GCATGCCTTT ACTCCCAGCA GGTGTCAAAG GCAGGCGGAC
  CTCAGAGTTT GAGGCCACCC AGGGCTACAG CTACACAGAG AAACAGTCTC CAAAAGCTAA
  AACTCAGCAA GCAAAAAACC AGCTATACTA TTTCAGTGTT CAAAATGTAG TCCCTTGGGG
  R
  TGTGGCTTAT TGGTACACCT AGGCATGTGT TGTAAGGCTT TGGGCTCAAT CCTCAGCATG
  AAAAAAAGCT ACGGAAAAAA AGCTTGATAA AAGTCTGTCA AATCTTTTAC AATGTATCCT
  AAAGCCTTAA AAAGAAAGTA AAAGGGGGCT TTCAACTTGA ACATGTAGAA CTTGAATAGA
  GTCAAGAAGC ATGACTATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39137302	mCV23508585	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	G
ss149161904	ENSMUSSNP1717400	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29963378					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64303607 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5774	CpG island 5774	1555 bp distal
Gm47513	predicted gene, 47513	1197 bp downstream
Gm61554	predicted gene, 61554	within coordinates
Gm61557	predicted gene, 61557	202 bp downstream
Rr273318	regulatory region 273318	7 bp distal
Rr281559	regulatory region 281559	1206 bp distal