rs29963534 SNP Detail

Summary

• ID
  rs29963534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:62765004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAT GAGGCCTGTA GAAAAAAATC
  Y
  GAACTCTTTG TTGTCTGTCT TATTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45063192	mCV24805249	ABI	CRAMUS_MOUSE	f	SNP	T				C		T
ss47399834	NES11048726	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T		C	T	T	T		C	T	T	C		T
ss149151542	ENSMUSSNP651830	ENSEMBL	ENSEMBL_Sanger	f	SNP	T						T
ss319742692	CHEV_1_62772419	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29963534					SNP	T	C	T	T	C	C	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47399834	NES11048726	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:62765004 () rs orientation: forward

Symbol	Name	Function Class
Nrp2	neuropilin 2	within coordinates
Tssr6998	transcription start site region 6998	35 bp downstream
Tssr6999	transcription start site region 6999	170 bp upstream
Tssr7000	transcription start site region 7000	466 bp upstream
Tssr7001	transcription start site region 7001	552 bp upstream
Tssr7002	transcription start site region 7002	633 bp upstream
Tssr7003	transcription start site region 7003	665 bp upstream
Tssr7004	transcription start site region 7004	820 bp upstream
Tssr7005	transcription start site region 7005	880 bp upstream
Tssr7006	transcription start site region 7006	1008 bp upstream
Tssr7007	transcription start site region 7007	1105 bp upstream
Tssr7008	transcription start site region 7008	1128 bp upstream
Tssr7009	transcription start site region 7009	1177 bp upstream
Tssr7010	transcription start site region 7010	1276 bp upstream
Tssr7011	transcription start site region 7011	1320 bp upstream