rs29963537 SNP Detail

Summary

• ID
  rs29963537
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:62765073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGGACTG TGAGATAGAT
  AAAGGTGTGG AGGGATAAAG CCTAGAAGGG GAGATAACAT GTCAAGACAT TAGTCTTTTC
  TACAGAGGGA TTTGTGTTTC CCTGTAGTCA TGAGGCCTGT AGAAAAAAAT CCGAACTCTT
  TGTTGTCTGT CTTATTGGTG AGGAGATTTA GACCCTGACG AGAGATACTT AAGAGATAAC
  K
  TAATTCCATT TTCCCCATTC ATGCCTAGGT AAATTATCAC ACACATACAG CCCTTGTCTT
  TTAGGAAAAA AACCCAAAAC CCTCATAATC GCCCTTCATT ATGAGACCTT TTGGCTCACA
  ACCCATCCCA GTTGATTGCA GAATAGATGC CTGTATTCAA TTTACATAAT CAAAAAAATT
  TTTCTTCCTA GAAGGAAAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47399837	NES11048727	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29963537					SNP	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47399837	NES11048727	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:62765073 () rs orientation: forward

Symbol	Name	Function Class
Nrp2	neuropilin 2	within coordinates
Tssr6998	transcription start site region 6998	104 bp downstream
Tssr6999	transcription start site region 6999	101 bp upstream
Tssr7000	transcription start site region 7000	397 bp upstream
Tssr7001	transcription start site region 7001	483 bp upstream
Tssr7002	transcription start site region 7002	564 bp upstream
Tssr7003	transcription start site region 7003	596 bp upstream
Tssr7004	transcription start site region 7004	751 bp upstream
Tssr7005	transcription start site region 7005	811 bp upstream
Tssr7006	transcription start site region 7006	939 bp upstream
Tssr7007	transcription start site region 7007	1036 bp upstream
Tssr7008	transcription start site region 7008	1059 bp upstream
Tssr7009	transcription start site region 7009	1108 bp upstream
Tssr7010	transcription start site region 7010	1207 bp upstream
Tssr7011	transcription start site region 7011	1251 bp upstream