rs29963543 SNP Detail

Summary

• ID
  rs29963543
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:62765487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTAGCTG GGTCAAAATT
  AAATTTCAAG AAACTAAGGA AAAGAAGAAA GAAATAGACC CAGGTTTGGC TTGGGTTCAA
  GAGGACCACA TGGTAAAAGA AAAAGCACAC AGTTTTGTAA GGCCTTTCTC GTGGCTGTGT
  AGGCAAGCAT CGTGGACTGT TGTAGGAAGT TTCCAGCTCT GCATATCAGA GGCCACAAAC
  R
  CACAGAGCTG TGTGTTTGTG GGGGAAGATC ATCAGTTAGA CAATAGCAAA CACCCATGTG
  TTCTCAAAGG CGGCAGACAT TATCTACAGC CATCGCCCAT AGCAAGCTGT GGGCTCAGCA
  CCAGTATTCC CACTGACCAG AAGGAAATAC TGAGGCTTTG AGAGAGCACA CCTGGACTTC
  AGGAGGCCTG GATTGGAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47399843	NES11048729	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29963543					SNP	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47399843	NES11048729	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:62765487 () rs orientation: forward

Symbol	Name	Function Class
Nrp2	neuropilin 2	within coordinates
Tssr6998	transcription start site region 6998	518 bp downstream
Tssr6999	transcription start site region 6999	294 bp downstream
Tssr7000	transcription start site region 7000	6 bp downstream
Tssr7001	transcription start site region 7001	69 bp upstream
Tssr7002	transcription start site region 7002	150 bp upstream
Tssr7003	transcription start site region 7003	182 bp upstream
Tssr7004	transcription start site region 7004	337 bp upstream
Tssr7005	transcription start site region 7005	397 bp upstream
Tssr7006	transcription start site region 7006	525 bp upstream
Tssr7007	transcription start site region 7007	622 bp upstream
Tssr7008	transcription start site region 7008	645 bp upstream
Tssr7009	transcription start site region 7009	694 bp upstream
Tssr7010	transcription start site region 7010	793 bp upstream
Tssr7011	transcription start site region 7011	837 bp upstream