rs29963821 SNP Detail

Summary

• ID
  rs29963821
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:23935199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCGG GCCGGCCTGC AGTTCCCCGT
  R
  GGCCGCGTGC ATCGGCTGCT CCGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39137338	mCV22702828	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss148808125	ENSMUSSNP6674075	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29963821					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23935199 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5374	CpG island 5374	286 bp proximal
Gm54518	predicted gene, 54518	162 bp downstream
H2ac4	H2A clustered histone 4	Coding-Synonymous
H3c2	H3 clustered histone 2	1129 bp upstream
Rr403663	regulatory region 403663	76 bp downstream
Rr403664	regulatory region 403664	869 bp upstream
Rr475938	regulatory region 475938	80 bp distal
Rr475939	regulatory region 475939	156 bp proximal
Rr475940	regulatory region 475940	393 bp proximal
Rr475941	regulatory region 475941	561 bp proximal
Tssr118860	transcription start site region 118860	130 bp downstream
Tssr118861	transcription start site region 118861	98 bp downstream
Tssr118862	transcription start site region 118862	9 bp downstream
Tssr118863	transcription start site region 118863	1125 bp upstream
Tssr121747	transcription start site region 121747	979 bp downstream