rs29964019 SNP Detail

Summary

• ID
  rs29964019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30174622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTT CTGCCTCGGT GGGAGCACCC
  Y
  GGCCCGAAGG TAGAGAGTTG GAGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45879152	mCV24692109	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss133095168	ENSMUSSNP4085593	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss321776219	CHEV_6_30124623	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29964019					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30174622 () rs orientation: forward

Symbol	Name	Function Class
BB283400	expressed sequence BB283400	2000 bp upstream
Cpgi17248	CpG island 17248	within coordinates
Mirc35hg	microRNA cluster 35, host gene	498 bp upstream
Rncr4	retina expressed non-coding RNA 4	within coordinates
Rr146074	regulatory region 146074	within coordinates
Tssr55327	transcription start site region 55327	1753 bp downstream
Tssr55328	transcription start site region 55328	634 bp upstream
Tssr55329	transcription start site region 55329	654 bp upstream
Tssr55330	transcription start site region 55330	702 bp upstream
Tssr55331	transcription start site region 55331	734 bp upstream
Tssr55332	transcription start site region 55332	757 bp upstream
Tssr55333	transcription start site region 55333	1192 bp upstream
Tssr55334	transcription start site region 55334	1858 bp upstream
Tssr60107	transcription start site region 60107	544 bp upstream
Tssr60108	transcription start site region 60108	514 bp upstream
Tssr60109	transcription start site region 60109	487 bp upstream
Tssr60110	transcription start site region 60110	105 bp downstream
Tssr60111	transcription start site region 60111	1110 bp downstream