rs29964322 SNP Detail

Summary

• ID
  rs29964322
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:62766524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCACTACT ACCTTTTCTC TCCATCTGGA ATCCTAAGAT
  GTGAAGGCCA GTAATGGAGT GTCAGCGGAA GTAATTGATT CCTCACACAC AGAGAATGCC
  Y
  CTGCCTTTAG TGTCAATGGA GCTGAACCAG ATTCTGGGCG GGTGAGCGAG ACGTGTAAAC
  AGTTCATAGC TGAGCTGTCA GGGCCAAGCC AGACACAGTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47399852	NES11048629	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29964322					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47399852	NES11048629	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:62766524 () rs orientation: forward

Symbol	Name	Function Class
Nrp2	neuropilin 2	within coordinates
Tssr6998	transcription start site region 6998	1555 bp downstream
Tssr6999	transcription start site region 6999	1331 bp downstream
Tssr7000	transcription start site region 7000	1043 bp downstream
Tssr7001	transcription start site region 7001	957 bp downstream
Tssr7002	transcription start site region 7002	871 bp downstream
Tssr7003	transcription start site region 7003	823 bp downstream
Tssr7004	transcription start site region 7004	641 bp downstream
Tssr7005	transcription start site region 7005	582 bp downstream
Tssr7006	transcription start site region 7006	422 bp downstream
Tssr7007	transcription start site region 7007	397 bp downstream
Tssr7008	transcription start site region 7008	363 bp downstream
Tssr7009	transcription start site region 7009	293 bp downstream
Tssr7010	transcription start site region 7010	223 bp downstream
Tssr7011	transcription start site region 7011	188 bp downstream