rs29965035 SNP Detail

Summary

• ID
  rs29965035
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:62766684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGCGGAA GTAATTGATT
  CCTCACACAC AGAGAATGCC CCTGCCTTTA GTGTCAATGG AGCTGAACCA GATTCTGGGC
  GGGTGAGCGA GACGTGTAAA CAGTTCATAG CTGAGCTGTC AGGGCCAAGC CAGACACAGT
  GGAGAGGGGG TGAGAGGGAG AACCATGGAA CAAATAATTG TTTTATTGGA AAAGAAAGCA
  R
  TAAATAATAT TTCAGCCCAG GAACTGGCTG TTTGAAAGGG ATGGAGACAG CCTAGGACCA
  GAAAAAAAAA AAAAAAAAAA AAAAAAAAAA CATGGCACAG GTTTGAATGG GAGAGTTTTT
  CTTTGTCTTG AGGTAGGAGG TTTCTTCCTG CCCCACCCCC TTTCTCCCAT TATCATCATT
  AAAATAATTA CTCTAACAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47399855	NES11048632	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29965035					SNP	A	A	A	G	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47399855	NES11048632	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:62766684 () rs orientation: forward

Symbol	Name	Function Class
Nrp2	neuropilin 2	within coordinates
Tssr6998	transcription start site region 6998	1715 bp downstream
Tssr6999	transcription start site region 6999	1491 bp downstream
Tssr7000	transcription start site region 7000	1203 bp downstream
Tssr7001	transcription start site region 7001	1117 bp downstream
Tssr7002	transcription start site region 7002	1031 bp downstream
Tssr7003	transcription start site region 7003	983 bp downstream
Tssr7004	transcription start site region 7004	801 bp downstream
Tssr7005	transcription start site region 7005	742 bp downstream
Tssr7006	transcription start site region 7006	582 bp downstream
Tssr7007	transcription start site region 7007	557 bp downstream
Tssr7008	transcription start site region 7008	523 bp downstream
Tssr7009	transcription start site region 7009	453 bp downstream
Tssr7010	transcription start site region 7010	383 bp downstream
Tssr7011	transcription start site region 7011	348 bp downstream
Tssr11873	transcription start site region 11873	1909 bp downstream