rs29965041 SNP Detail

Summary

• ID
  rs29965041
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:62767178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGAAAGT ATTATTATTG
  TTATTATTAT TATTATTATT ATTATTATTA TTATTTGGTC CTGCCAGATA CATGACTCCA
  TCCAACCCCA GGGCAGGCTG TAGGTTAAAT GCTGGGGTAT AGACTTCTCT TCTGGGGCGT
  CTTCACTATT GTACCCTTCT CAGCAAGCCT CTTTTCCACA CGTGGCTCTT AGACTTCATC
  M
  CCAGCACTAA TGTCTTCTCC ATGCTATGGG GTCCCCACAT ATGTGTGGTG TGTGTGTGTG
  TGTGGTGTGG TATGTATGTG GTATGTGTAT GTGTGTGGTC ATCACAATAT GGTGACCAGC
  CAGCCAGCTG ATCCATACAC ACCACAAGTG ACCTGCTTAC GGCTTCCAGA GAAATAAGTC
  CTTTAAGTAC GGTTCAACCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47399861	NES11048639	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29965041					SNP	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47399861	NES11048639	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:62767178 () rs orientation: forward

Symbol	Name	Function Class
Nrp2	neuropilin 2	within coordinates
Tssr6999	transcription start site region 6999	1985 bp downstream
Tssr7000	transcription start site region 7000	1697 bp downstream
Tssr7001	transcription start site region 7001	1611 bp downstream
Tssr7002	transcription start site region 7002	1525 bp downstream
Tssr7003	transcription start site region 7003	1477 bp downstream
Tssr7004	transcription start site region 7004	1295 bp downstream
Tssr7005	transcription start site region 7005	1236 bp downstream
Tssr7006	transcription start site region 7006	1076 bp downstream
Tssr7007	transcription start site region 7007	1051 bp downstream
Tssr7008	transcription start site region 7008	1017 bp downstream
Tssr7009	transcription start site region 7009	947 bp downstream
Tssr7010	transcription start site region 7010	877 bp downstream
Tssr7011	transcription start site region 7011	842 bp downstream
Tssr11873	transcription start site region 11873	1415 bp downstream