rs29965388 SNP Detail

Summary

• ID
  rs29965388
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:62782255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCGGTAA ACACCTGGTT
  TATTGAGTAT TTCTGTGTTG TTTGTTGTTT TTAGTTGTTG TTGTTGTTTT CGTCATGCTT
  AGAGTGTCTA TTATCCCTTT CCTAAATTCT GCTTCCTTTA CTTATTTTAA AATCCAAACG
  TAGTGAATAA AAACTACTGT AATTGCCAGC ATTTGCACCC ACATCATTAA CTCGTACTCA
  Y
  TCTTGCTCTT TGTATATGCT GGGTCTCTGT TCCTGGCTCT GCCCAGAGCC AACAGTTGCT
  GGGTTTAAAG CACAAGGGCT CCTCTACTAT GACTCCACCT CTGGGGTTGT GGTGGCTGTA
  ATCCTCTCTG TTCCTGCTGC TGCTGCCCAA GCCTGTAGCA GGCTGCGATT GTGTGAGTGT
  GTGGCATGTT TCATCAGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47400128	NES11047956	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29965388					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47400128	NES11047956	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:62782255 () rs orientation: forward

Symbol	Name	Function Class
Nrp2	neuropilin 2	within coordinates
Tssr7018	transcription start site region 7018	478 bp upstream