rs29965420 SNP Detail

Summary

• ID
  rs29965420
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91760621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAA GGGCAGCCAT GTGATATGAA
  R
  CCTTTCTTTA TTCGTTCAAC TTTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45381567	mCV24892498	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	G
ss320392921	CHEV_2_91770433	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29965420					SNP	A	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91760621 () rs orientation: forward

Symbol	Name	Function Class
Chrm4	cholinergic receptor, muscarinic 4	1588 bp downstream
Cpgi11915	CpG island 11915	1513 bp distal
Cpgi11916	CpG island 11916	778 bp proximal
D2Mit1007	DNA segment, Chr 2, Massachusetts Institute of Technology 1007	1593 bp proximal
D2Mit1008	DNA segment, Chr 2, Massachusetts Institute of Technology 1008	1688 bp proximal
Gm39876	predicted gene, 39876	1274 bp upstream
Gm75422	predicted gene, 75422	within coordinates
Mdk	midkine	within coordinates
Rr560807	regulatory region 560807	1847 bp distal
Rr560808	regulatory region 560808	872 bp distal
Rr560809	regulatory region 560809	49 bp distal
Rr560810	regulatory region 560810	1402 bp proximal
Tssr18929	transcription start site region 18929	600 bp downstream
Tssr25211	transcription start site region 25211	386 bp upstream
Tssr25212	transcription start site region 25212	372 bp upstream
Tssr25213	transcription start site region 25213	643 bp downstream
Tssr25214	transcription start site region 25214	1175 bp downstream
Tssr25215	transcription start site region 25215	1385 bp downstream
Tssr25216	transcription start site region 25216	1399 bp downstream
Tssr25217	transcription start site region 25217	1420 bp downstream
Tssr25218	transcription start site region 25218	1452 bp downstream
Tssr25219	transcription start site region 25219	1498 bp downstream
Tssr25220	transcription start site region 25220	1679 bp downstream
Tssr25221	transcription start site region 25221	1718 bp downstream