rs29965544 SNP Detail

Summary

• ID
  rs29965544
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156021671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCC CGAGATGAAG GGCACGGCCG
  R
  GGAGAGGTGA CCCCACCGTA CCGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45382285	mCV23683880	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss148067886	ENSMUSSNP2083854	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320578044	CHEV_2_156005487	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29965544					SNP	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156021671 () rs orientation: forward

Symbol	Name	Function Class
A930012N16Rik	RIKEN cDNA A930012N16 gene	826 bp upstream
Cpgi12544	CpG island 12544	within coordinates
Gm75045	predicted gene, 75045	within coordinates
Rbm39	RNA binding motif protein 39	within coordinates
Rr367341	regulatory region 367341	183 bp downstream
Rr367342	regulatory region 367342	387 bp upstream
Rr568193	regulatory region 568193	1794 bp distal
Rr568194	regulatory region 568194	182 bp distal
Rr568195	regulatory region 568195	143 bp distal
Rr568196	regulatory region 568196	within coordinates
Rr568197	regulatory region 568197	406 bp proximal
Rr568198	regulatory region 568198	672 bp proximal
Tssr21144	transcription start site region 21144	142 bp downstream
Tssr27042	transcription start site region 27042	1971 bp upstream
Tssr27043	transcription start site region 27043	221 bp downstream
Tssr27044	transcription start site region 27044	384 bp downstream