rs29965627 SNP Detail

Summary

• ID
  rs29965627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87826129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGC TCTCGCACCT GGGAAGGAAC
  R
  GCAGAAGCCA ACTAGCAAGT TTGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45383389	mCV23484221	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	G
ss135468774	ENSMUSSNP858704	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
ss320835504	CHEV_3_87722744	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29965627					SNP	A	A	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87826129 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13346	CpG island 13346	533 bp proximal
Gm64606	predicted gene, 64606	within coordinates
Mrpl24	mitochondrial ribosomal protein L24	684 bp upstream
Rr367453	regulatory region 367453	431 bp upstream
Tssr29862	transcription start site region 29862	668 bp upstream
Tssr29863	transcription start site region 29863	693 bp upstream
Tssr29864	transcription start site region 29864	706 bp upstream
Tssr29865	transcription start site region 29865	745 bp upstream
Tssr29866	transcription start site region 29866	838 bp upstream
Tssr29867	transcription start site region 29867	871 bp upstream