rs29965744 SNP Detail

Summary

• ID
  rs29965744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:62767211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGCGTCTT CACTATTGTA CCCTTCTCAG CAAGCCTCTT
  TTCCACACGT GGCTCTTAGA CTTCATCACC AGCACTAATG TCTTCTCCAT GCTATGGGGT
  Y
  CCCACATATG TGTGGTGTGT GTGTGTGTGT GGTGTGGTAT GTATGTGGTA TGTGTATGTG
  TGTGGTCATC ACAATATGGT GACCAGCCAG CCAGCTGATC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47399864	NES11048641	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29965744					SNP	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47399864	NES11048641	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:62767211 () rs orientation: forward

Symbol	Name	Function Class
Nrp2	neuropilin 2	within coordinates
Rr412042	regulatory region 412042	1402 bp proximal
Tssr7000	transcription start site region 7000	1730 bp downstream
Tssr7001	transcription start site region 7001	1644 bp downstream
Tssr7002	transcription start site region 7002	1558 bp downstream
Tssr7003	transcription start site region 7003	1510 bp downstream
Tssr7004	transcription start site region 7004	1328 bp downstream
Tssr7005	transcription start site region 7005	1269 bp downstream
Tssr7006	transcription start site region 7006	1109 bp downstream
Tssr7007	transcription start site region 7007	1084 bp downstream
Tssr7008	transcription start site region 7008	1050 bp downstream
Tssr7009	transcription start site region 7009	980 bp downstream
Tssr7010	transcription start site region 7010	910 bp downstream
Tssr7011	transcription start site region 7011	875 bp downstream
Tssr11873	transcription start site region 11873	1382 bp downstream