rs29965747 SNP Detail

Summary

• ID
  rs29965747
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:62767329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCCTTCTC AGCAAGCCTC
  TTTTCCACAC GTGGCTCTTA GACTTCATCA CCAGCACTAA TGTCTTCTCC ATGCTATGGG
  GTCCCCACAT ATGTGTGGTG TGTGTGTGTG TGTGGTGTGG TATGTATGTG GTATGTGTAT
  GTGTGTGGTC ATCACAATAT GGTGACCAGC CAGCCAGCTG ATCCATACAC ACCACAAGTG
  R
  CCTGCTTACG GCTTCCAGAG AAATAAGTCC TTTAAGTACG GTTCAACCCA GACTGTTTCC
  GGCTACCTTG GAGACTTCCT GCAACCTGCC TCTCTTCTTA TAGAAGCGTG TGCACTTTCT
  AGACATATTC CCTCATGGTC CACTAAGACT CAGCCTAACA GCACCCTATA TTCCTGGGTG
  CTACTTCCGT GCCCAGCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47399867	NES11048642	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29965747					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47399867	NES11048642	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:62767329 () rs orientation: forward

Symbol	Name	Function Class
Nrp2	neuropilin 2	within coordinates
Tssr7000	transcription start site region 7000	1848 bp downstream
Tssr7001	transcription start site region 7001	1762 bp downstream
Tssr7002	transcription start site region 7002	1676 bp downstream
Tssr7003	transcription start site region 7003	1628 bp downstream
Tssr7004	transcription start site region 7004	1446 bp downstream
Tssr7005	transcription start site region 7005	1387 bp downstream
Tssr7006	transcription start site region 7006	1227 bp downstream
Tssr7007	transcription start site region 7007	1202 bp downstream
Tssr7008	transcription start site region 7008	1168 bp downstream
Tssr7009	transcription start site region 7009	1098 bp downstream
Tssr7010	transcription start site region 7010	1028 bp downstream
Tssr7011	transcription start site region 7011	993 bp downstream
Tssr11873	transcription start site region 11873	1264 bp downstream