rs29965800 SNP Detail

Summary

• ID
  rs29965800
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53616257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAA TGTCCGCCAC TTGGGGAGCG
  Y
  TCGATCTAGG GGGGTTGGGG AGGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39137458	mCV22985761	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss149017466	ENSMUSSNP4231412	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324342374	CHEV_13_53557590	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29965800					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53616257 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5621	CpG island 5621	within coordinates
Gm33763	predicted gene, 33763	within coordinates
Rr388456	regulatory region 388456	within coordinates
Rr406701	regulatory region 406701	983 bp proximal
Rr480050	regulatory region 480050	100 bp distal
Rr480051	regulatory region 480051	171 bp distal
Rr480052	regulatory region 480052	within coordinates