rs29965894 SNP Detail

Summary

• ID
  rs29965894
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:62783912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTCTAAG ATGATTCTAA
  ATTTCATCAA GTGAAAACTG AGATTAACCA TTAGAGATTG CAAAACTATA AGTGTTGTTC
  CTTTCTACAT AAGTTATTAA AATAGAAGTG AATCAATTAT CATATGATGT GGCCGTATAG
  AAGGATTTAA AGCCAAAGTG ACTGGACTTG AATCTCTCTG ACGTACAACC CAGCCAAGGT
  R
  TTGAACCTCT CAGTATGTTG TCTGGGAAAT ACCTATCATC ACTATTATCA CGAGTACTAT
  TATTTTATTA CTATTTAATA TAGTCATGGA TATTGAAAAG CAAGCATTTA TAGCCAAGAG
  GGGCCTATAT AAATCAGGTG AAGGACTAAC ACAGATTGTG TAGTCGGTAT TGGAAATTGT
  TCATCTTTGT GCTTGTTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47400134	NES11047805	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29965894					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47400134	NES11047805	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:62783912 () rs orientation: forward

Symbol	Name	Function Class
Nrp2	neuropilin 2	within coordinates
Tssr7018	transcription start site region 7018	1151 bp downstream