rs29966224 SNP Detail

Summary

• ID
  rs29966224
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:76376379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTC AATCCATGAG TTAGTGAAGC
  W
  GATGGAATCC AGACATGGGA GAAGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39634820	mCV23927322	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	T
ss147533129	ENSMUSSNP1091618	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		T
ss325699778	CHEV_18_76402962	CHEVERUD	SCREENING_POP	f	SNP						A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29966224					SNP	A	A	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76376379 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10251	CpG island 10251	670 bp distal
Rr540992	regulatory region 540992	1597 bp distal
Rr540993	regulatory region 540993	509 bp distal
Smad2	SMAD family member 2	Intron
Tssr151989	transcription start site region 151989	1994 bp downstream
Tssr151990	transcription start site region 151990	1946 bp downstream
Tssr151991	transcription start site region 151991	1844 bp downstream
Tssr151992	transcription start site region 151992	1567 bp downstream
Tssr151993	transcription start site region 151993	1349 bp downstream
Tssr151994	transcription start site region 151994	1148 bp downstream