rs29966934 SNP Detail

Summary

• ID
  rs29966934
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156882484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTC CAGCTCAGCT GAGGAGCGCC
  K
  CAGCAGCTCA GCCTCCTCTT CCACG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45382302	mCV23691444	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss148090144	ENSMUSSNP2630421	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		G
ss320583700	CHEV_2_156866300	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29966934					SNP	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156882484 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12565	CpG island 12565	within coordinates
Mtcl2	microtubule crosslinking factor 2	Coding-Synonymous
Rr568412	regulatory region 568412	23 bp proximal