rs29967125 SNP Detail

Summary

• ID
  rs29967125
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37165703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGACATTTT CTCTCTTTCT GAAAACATAA AACTGTTTAA
  TAGTTCCAAA TGTAGAAAGG ACCACATAAA CCATCTAAAG AATGTTTTAG ATGATTATTA
  S
  CCTGAGAGAC CTTGAAACAA AATGACTTAT TTTAAAACCA GGCCAAATTG ATGACTAAGT
  ATCTGCCCAA TCTGACCCTT AGTTTAGTTT GAGAATTTA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46359161	mCV24902286	ABI	CRAMUS_MOUSE	f	SNP	G	G					G		C
ss50674838	NES14008183	PERLEGEN	MM_PANEL2	f	SNP		G	C	G	G	G		G	C	G	C		G	G	C	G		C
ss322906502	CHEV_9_37061992	CHEVERUD	SCREENING_POP	f	SNP												C					G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29967125					SNP	G	G	C	G	G	G	G	G	C	G	C	C	G	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674838	NES14008183	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37165703 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	765 bp proximal
Gm10177	predicted gene 10177	1226 bp downstream
Gm48081	predicted gene, 48081	1091 bp upstream
Gm65989	predicted gene, 65989	1042 bp downstream
Rr676656	regulatory region 676656	267 bp proximal
Rr676657	regulatory region 676657	997 bp proximal
Rr676658	regulatory region 676658	1102 bp proximal
Rr676659	regulatory region 676659	1321 bp proximal
Rr676660	regulatory region 676660	1629 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	within coordinates
Tssr88821	transcription start site region 88821	950 bp downstream
Tssr88822	transcription start site region 88822	974 bp downstream
Tssr88823	transcription start site region 88823	996 bp downstream
Tssr88824	transcription start site region 88824	1022 bp downstream
Tssr88825	transcription start site region 88825	1037 bp downstream
Tssr88826	transcription start site region 88826	1123 bp downstream
Tssr88827	transcription start site region 88827	1216 bp downstream
Tssr88828	transcription start site region 88828	1239 bp downstream
Tssr88829	transcription start site region 88829	1262 bp downstream
Tssr88830	transcription start site region 88830	1278 bp downstream
Tssr88831	transcription start site region 88831	1323 bp downstream