rs29967303 SNP Detail

Summary

• ID
  rs29967303
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:29737377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCT GAGGTTGTGA GGCTCCGACT
  R
  GGAGGTAGTG TGAACCGTAG GCTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45879707	mCV24693623	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss133092122	ENSMUSSNP5002096	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss321775199	CHEV_6_29687378	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29967303					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29737377 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17242	CpG island 17242	707 bp distal
Rr627623	regulatory region 627623	1674 bp distal
Smo	smoothened, frizzled class receptor	Intron
Tssr55287	transcription start site region 55287	1831 bp downstream
Tssr55288	transcription start site region 55288	1749 bp downstream
Tssr55289	transcription start site region 55289	1715 bp downstream
Tssr55290	transcription start site region 55290	1698 bp downstream
Tssr55291	transcription start site region 55291	1229 bp downstream