rs29967446 SNP Detail

Summary

• ID
  rs29967446
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:85273535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGATTTTT GCTTAATTGG AAGTTTGAAG ATCCACTTCT
  AATCTGATTT TTCAAGTAAG AAGACACCTT TAATCCAATC CTTTATCTGG GAAAATTTAT
  M
  TGATACTGTA AGCCTCTGTG AAAACACAGG AAAAGGAAGC TTCTGCTCTT TGCCTGTTTC
  TCTTGCCTTG CTAGCAAGCC CATTCCTTCA CTGCTATTA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39138152	mCV23234259	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C	A
ss144799157	ENSMUSSNP364094	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A		A
ss324460045	CHEV_13_85265021	CHEVERUD	SCREENING_POP	f	SNP						A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29967446					SNP	C	C	A	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:85273535 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5915	CpG island 5915	1283 bp proximal
Gm4076	predicted gene 4076	1134 bp downstream
Rr388812	regulatory region 388812	1597 bp upstream
Rr483356	regulatory region 483356	1732 bp distal
Rr483357	regulatory region 483357	1097 bp proximal
Tssr4134	transcription start site region 4134	1432 bp upstream
Tssr120547	transcription start site region 120547	1148 bp upstream
Tssr120548	transcription start site region 120548	1274 bp upstream
Tssr120549	transcription start site region 120549	1319 bp upstream
Tssr123349	transcription start site region 123349	1214 bp downstream
Tssr123350	transcription start site region 123350	1570 bp downstream
Tssr123351	transcription start site region 123351	1671 bp downstream
Tssr123352	transcription start site region 123352	1977 bp downstream