rs29967580 SNP Detail

Summary

• ID
  rs29967580
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17464682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTT TTTTTTTTCC TGGGACTCAG
  K
  GGAGGTGAAA TACATTATAA CCAGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45879384	mCV23977716	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	T
ss133015002	ENSMUSSNP2554749	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		T
ss321754663	CHEV_6_17414683	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29967580					SNP	T	G	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17464682 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	189 bp distal
Met	met proto-oncogene	Intron
Rr626799	regulatory region 626799	635 bp distal
Rr626800	regulatory region 626800	1188 bp distal
Rr626801	regulatory region 626801	1145 bp distal
Rr626802	regulatory region 626802	within coordinates
Tssr55050	transcription start site region 55050	1241 bp downstream
Tssr55051	transcription start site region 55051	1102 bp downstream
Tssr55052	transcription start site region 55052	874 bp downstream
Tssr55053	transcription start site region 55053	854 bp downstream
Tssr55054	transcription start site region 55054	785 bp downstream
Tssr55055	transcription start site region 55055	777 bp downstream
Tssr55056	transcription start site region 55056	612 bp downstream
Tssr55057	transcription start site region 55057	570 bp downstream
Tssr55058	transcription start site region 55058	534 bp downstream
Tssr55059	transcription start site region 55059	509 bp downstream