rs29968087 SNP Detail

Summary

• ID
  rs29968087
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:58969497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGCC ACGCTCCGCG CGGGTGCGGG
  M
  GGCGAATCTG GGCTGGGACC GTACT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39634744	mCV24038475	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C
ss147203006	ENSMUSSNP2215806	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		C
ss325637464	CHEV_18_58996079	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29968087					SNP	A	A	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:58969497 () rs orientation: forward

Symbol	Name	Function Class
Adamts19	ADAM metallopeptidase with thrombospondin type 1 motif 19	242 bp upstream
Cpgi10085	CpG island 10085	within coordinates
Tssr151225	transcription start site region 151225	243 bp downstream
Tssr151226	transcription start site region 151226	216 bp downstream
Tssr151227	transcription start site region 151227	86 bp downstream
Tssr151228	transcription start site region 151228	51 bp downstream
Tssr151229	transcription start site region 151229	29 bp downstream
Tssr151230	transcription start site region 151230	296 bp upstream