rs29968589 SNP Detail

Summary

• ID
  rs29968589
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:154031765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGACGAT AAATGTCAGC
  CATGATGTCA TGTAGCAGCC ATGAGCATCA CACAGACGAC TCAGTCCCCA GGACTGTTTT
  ATTGGTTCCA GAAAGTTCTC TTGTATGAGA CTTTGGTACC AGCTATGTCA GGCATTGTGG
  CAACCTCATC CAGGGTCTAT TGGCACCACA CTTCATGCCT GCCGGCTTCC TTTTGTATCT
  R
  GGTAGCTTTG AAAAGGCAAC TCATCTTTCA GGCTAATACC TACCCCCATC TGGACTTTGA
  GTTTAAACCC TCCAGGTCAC CAGTTGCTTT GAAGTCCAAA GGGTGGTGTC AAGTTCCTGA
  GAAAGTGCCT GACTTTGATT TTCCCAGACC CAGCTCAGCA GGGTGGCAGA GGTGACTAAT
  ATCAGCTGAA CCCCGATACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45382427	mCV23868174	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss148023878	ENSMUSSNP2533225	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320569685	CHEV_2_154015581	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29968589					SNP	A	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154031765 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	973 bp upstream
Rr567774	regulatory region 567774	483 bp proximal
Rr567775	regulatory region 567775	984 bp proximal
Rr567776	regulatory region 567776	1210 bp proximal
Tssr20971	transcription start site region 20971	904 bp upstream
Tssr20972	transcription start site region 20972	918 bp upstream
Tssr20973	transcription start site region 20973	931 bp upstream
Tssr20974	transcription start site region 20974	961 bp upstream
Tssr20975	transcription start site region 20975	988 bp upstream
Tssr20976	transcription start site region 20976	1423 bp upstream