rs29968629 SNP Detail

Summary

• ID
  rs29968629
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:105501240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCCAGACC TAGAAGGACG AGTGCCTGTA TTTGTGGTAT
  TATTTTTTCT TTTGCTTCCC TTTTTCATTC CTTTTCTTTT CGGGAGGAAT CTGGCTGCAG
  R
  GCCTTGATCC CAGAGTTCGG ATATTCTCCC AGGTGGACCC CGATCTCCGA GGAAACAACC
  AGGGCTTAAT CCCTCATTGC TCTGTCCCTG ACTCCCAAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45383222	mCV27580888	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29968629					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105501240 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12017	CpG island 12017	1752 bp distal
Cpgi12018	CpG island 12018	574 bp distal
Cpgi12019	CpG island 12019	1499 bp proximal
Pax6	paired box 6	within coordinates
Pax6os1	paired box 6 opposite strand 1	565 bp upstream
Rr370602	regulatory region 370602	within coordinates
Tssr19250	transcription start site region 19250	1981 bp downstream
Tssr19251	transcription start site region 19251	1945 bp downstream
Tssr25562	transcription start site region 25562	597 bp upstream
Tssr25563	transcription start site region 25563	573 bp upstream