rs29969179 SNP Detail

Summary

• ID
  rs29969179
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134806394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTA TTCAAAGCTT ATTCATATGA
  Y
  AAAGTGTACC CGTTCCACTG TCCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45880523	mCV24013244	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss133787583	ENSMUSSNP3902051	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss321982531	CHEV_6_134779449	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29969179					SNP	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134806394 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18077	CpG island 18077	498 bp proximal
Crebl2	cAMP responsive element binding protein-like 2	723 bp upstream
Gm67917	predicted gene, 67917	within coordinates
Rr368197	regulatory region 368197	454 bp upstream
Rr639726	regulatory region 639726	689 bp distal
Rr639727	regulatory region 639727	905 bp distal
Rr639728	regulatory region 639728	within coordinates
Rr639729	regulatory region 639729	654 bp proximal
Rr639730	regulatory region 639730	835 bp proximal
Rr639731	regulatory region 639731	1030 bp proximal
Tssr59250	transcription start site region 59250	714 bp upstream
Tssr59251	transcription start site region 59251	785 bp upstream
Tssr59252	transcription start site region 59252	888 bp upstream
Tssr59253	transcription start site region 59253	1333 bp upstream
Tssr59254	transcription start site region 59254	1601 bp upstream