rs29969322 SNP Detail

Summary

• ID
  rs29969322
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17465360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTTCCT TTATAGCTCA
  ACTATTATAG CTGACTAATG AATTTCCTCT GCATGGAGAT GATCTGAAAA CGATGTACAC
  GGTGTTTCCC TTTGCTACTG GGACATAAAT TGTGCTTTTA TGCCCCAGTG TTAGTGTTGC
  CCGGATTATT TACAGGTATA TAGCTTTCCT CTCCAGCTGG AAGCTTCCTC GGCTTTGTTC
  R
  CAAGTGTAAA TTTCCACTGT GGAGCAGGAG TGGGTTCTGT TACACATTGC AGACTTGTCA
  CTGTCATTTC AGGTTGTGAT ATACTCACTG TTTATCTCCT CTGAGCAGAT AAATAACACA
  CATGAGACGT ACAACTTCAA TAAGAAATTT GATGGTACCA AAAATGTGTT CCTACATAGT
  GCAATAGGTG CTTTAAAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45881425	mCV23977704	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss133015011	ENSMUSSNP4003581	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29969322					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17465360 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	867 bp distal
Met	met proto-oncogene	Intron
Rr626799	regulatory region 626799	1313 bp distal
Rr626800	regulatory region 626800	1866 bp distal
Rr626801	regulatory region 626801	1823 bp distal
Rr626802	regulatory region 626802	157 bp distal
Tssr55050	transcription start site region 55050	1919 bp downstream
Tssr55051	transcription start site region 55051	1780 bp downstream
Tssr55052	transcription start site region 55052	1552 bp downstream
Tssr55053	transcription start site region 55053	1532 bp downstream
Tssr55054	transcription start site region 55054	1463 bp downstream
Tssr55055	transcription start site region 55055	1455 bp downstream
Tssr55056	transcription start site region 55056	1290 bp downstream
Tssr55057	transcription start site region 55057	1248 bp downstream
Tssr55058	transcription start site region 55058	1212 bp downstream
Tssr55059	transcription start site region 55059	1187 bp downstream