rs29969434 SNP Detail

Summary

• ID
  rs29969434
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83143948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTAGGGACCA GAAATGTCAG GCCCCTGCAG CTGGAGTTAG AGCCAGTTGT AGTTCTAGTA
  ACTGAAGTCA GGTCCTCTGT AAGAACAGTA GGTGCTCTTA ACCACTGAAC CAGCTCTTCA
  GCTCCATAAC TTTATTATGT AAAAGGTGCT TTGCATTCAT ATATATATTT GAAAGTTCAG
  GTTTTCTCAG CAGACTATTT CAGAACTTTT AGTATGCTGG ATATATTTCT CAAGAGTCTC
  TAGGGCATGT GTATGTGTGT GTATGTATGT GTGTATGTAT GTGTGTGTGT GTGTGTGTGT
  R
  TATATGTATG TATATATATA TATATATGCA TAATCTCCCC CAAATAGACA GGGAGATACT
  GGATTTTTGT TTGTTTGTTT GCTTGCTTGC TTGCTTGCTT GAGTTTTGGT CGTGTCTACT
  TAACGTCTGG TGCTGTTTTT GGAAATGAAG TTCCCGAGGT AGAAACCCAC CATTGTAAAG
  GGGCAGTGTG TGCCAGTGGT TTTTACTTTA ATGGAGGTAT GTGTTTAATA GAGTCTGGTG
  GAAATATAGC TCTTATCTAG TCTGCATTTG TAACAGGTTC TCAGGTGATG CTGTTCAGGG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45879846	mCV23932946	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss133346818	ENSMUSSNP2562719	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29969434					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83143948 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17595	CpG island 17595	537 bp distal
Dctn1	dynactin 1	within coordinates
Gm15624	predicted gene 15624	within coordinates
Rr399719	regulatory region 399719	1136 bp downstream
Tssr57316	transcription start site region 57316	989 bp downstream