rs29969505 SNP Detail

Summary

• ID
  rs29969505
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:86413043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCT CACCCCCTCC CCATCCCCCA
  Y
  GAACCAAGCC GCTGTGATGT CCTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39634262	mCV23896689	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss325714169	CHEV_18_86564310	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29969505					SNP	C	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:86413043 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10352	CpG island 10352	553 bp distal
Cpgi10353	CpG island 10353	within coordinates
Gm54041	predicted gene, 54041	1143 bp upstream
Neto1	neuropilin (NRP) and tolloid (TLL)-like 1	34 bp upstream
Rr542239	regulatory region 542239	1141 bp distal
Rr542240	regulatory region 542240	640 bp distal
Rr542241	regulatory region 542241	within coordinates
Rr542242	regulatory region 542242	124 bp proximal
Tg(Ddx4-cre)1Dcas	transgene insertion 1, Diego H Castrillon	within coordinates
Tssr152242	transcription start site region 152242	136 bp downstream
Tssr152243	transcription start site region 152243	115 bp downstream
Tssr152244	transcription start site region 152244	55 bp downstream
Tssr152245	transcription start site region 152245	within coordinates
Tssr152246	transcription start site region 152246	34 bp upstream
Tssr152247	transcription start site region 152247	84 bp upstream
Tssr152248	transcription start site region 152248	266 bp upstream
Tssr152249	transcription start site region 152249	357 bp upstream
Tssr152250	transcription start site region 152250	628 bp upstream