rs29970174 SNP Detail

Summary

• ID
  rs29970174
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12476482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGCCCGC AGTCGCCAGG
  ACTCACCCCG GTGGTAGTAA GCGCTTTGCT CCGACTTGTG TCCCCTGACG GACGCCGTCC
  GGTTCCCGGA GCCGCCACAG GCAGAGGGCG GGGTCAGCCC GCGGCCGTTT CCGCGAGAAC
  GACTGCAGGG GCGGGGCGTC CGAGTGCTGC GAGCTGGGGC TGTTGGGCTC TTAATGTCAC
  M
  CACGCAGACC TATGGCTGGC TGTGGGAGTG GCTGGCTGGG GTTGGGGTGT GGCTCACCTC
  ACGTGCTGGA AGCCCCCAGG TTGATTTCCA CCCAGCTCTG CACAAATCGG TCGGGGTGCA
  CCCCTGTAGT TCCAGCCCTG CGAGGTGGAG GCAGGAGGAC CACAAGTTCA ATGTCATACT
  GGAGAACTTA AGGAATTCGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss39138181	mCV22708122	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	A
ss148681970	ENSMUSSNP1087253	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs29970174					SNP	C	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12476482 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5278	CpG island 5278	within coordinates
Lgals8	lectin, galactose binding, soluble 8	within coordinates
Rr281011	regulatory region 281011	within coordinates
Rr369646	regulatory region 369646	865 bp downstream
Rr369647	regulatory region 369647	343 bp downstream
Tssr118345	transcription start site region 118345	904 bp downstream
Tssr121453	transcription start site region 121453	488 bp upstream
Tssr121454	transcription start site region 121454	184 bp upstream
Tssr121455	transcription start site region 121455	81 bp upstream
Tssr121456	transcription start site region 121456	52 bp upstream
Tssr121457	transcription start site region 121457	28 bp upstream