rs29970538 SNP Detail

Summary

• ID
  rs29970538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:166526518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTGCCCAG GTGTCTGCAC ATAGTGTCAC CTGCTCCAAA
  CGGAAGCTTT TTATTCTAAG GACCACTCCT TTCCCACATG TACCCAAATA CAGAGGGGGC
  Y
  CTGGCACCCC ATGCACCCTT GGGTGGAGCT ACAGAGAGGT GGAGAGGGGT GGGGGAGGTG
  GGGCTTGTCT AATCCTCTGG GGAGGTGGGG GCTCGCCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45382545	mCV23066169	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss148258114	ENSMUSSNP4737762	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29970538					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166526518 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prex1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1			Intron
				Noncoding-Transcript-Variant
Rr570343	regulatory region 570343			1321 bp distal
Rr570344	regulatory region 570344			258 bp distal
Rr570345	regulatory region 570345			1219 bp proximal