rs29971135 SNP Detail

Summary

• ID
  rs29971135
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136803723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTT TCCGACCTGT ATAAGGGGAT
  M
  TGAAACAGGA GTGGAGATAA TGAAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss45880640	mCV24050776	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					A	C
ss51454443	NES13991532	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	A	C	C		C	C	A	A	C	A
ss133848535	ENSMUSSNP5274772	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs29971135					SNP	C	C	C	C	A	C	C	A	C	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51454443	NES13991532	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136803723 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	901 bp upstream
Cpgi18110	CpG island 18110	844 bp proximal
Rr380176	regulatory region 380176	299 bp upstream
Rr640072	regulatory region 640072	558 bp proximal
Rr640073	regulatory region 640073	1498 bp proximal
Tssr2044	transcription start site region 2044	1732 bp upstream
Tssr59337	transcription start site region 59337	1020 bp upstream
Tssr59338	transcription start site region 59338	1036 bp upstream
Tssr59339	transcription start site region 59339	1074 bp upstream
Tssr59340	transcription start site region 59340	1105 bp upstream
Tssr59341	transcription start site region 59341	1689 bp upstream
Tssr63834	transcription start site region 63834	692 bp upstream
Tssr63835	transcription start site region 63835	629 bp upstream
Tssr63836	transcription start site region 63836	989 bp downstream
Tssr63837	transcription start site region 63837	1022 bp downstream
Tssr63838	transcription start site region 63838	1041 bp downstream
Tssr63839	transcription start site region 63839	1095 bp downstream
Tssr63840	transcription start site region 63840	1326 bp downstream
Tssr63841	transcription start site region 63841	1399 bp downstream
Tssr63842	transcription start site region 63842	1461 bp downstream
Wbp11	WW domain binding protein 11	within coordinates