rs29971218 SNP Detail

Summary

• ID
  rs29971218
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86628708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG GCAGGTGGTG TGTCCCTTGT
  M
  ATCTCTCCTA GAGCAGGAGT TGGCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45883190	mCV23943368	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C
ss133358190	ENSMUSSNP1209026	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss321846882	CHEV_6_86601720	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29971218					SNP	C	C	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86628708 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mxd1	MAX dimerization protein 1			Intron
				Noncoding-Transcript-Variant
Tssr61829	transcription start site region 61829			1744 bp upstream
Tssr61830	transcription start site region 61830			1553 bp upstream