rs29971303 SNP Detail

Summary

• ID
  rs29971303
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:136804610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAA GGAGAATTTT TACAAGACCA
  Y
  AGTGCCTCTG CCTGCAAACG TTGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss45879878	mCV24051062	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					T	C
ss51454431	NES13991547	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	C	C		C	C	T	T	C	T
ss133848553	ENSMUSSNP2524840	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs29971303					SNP	C	C	C	C	T	C	C	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51454431	NES13991547	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136804610 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
BC049715	cDNA sequence BC049715			14 bp upstream
Cpgi18110	CpG island 18110			within coordinates
Rr380176	regulatory region 380176			within coordinates
Rr640072	regulatory region 640072			within coordinates
Rr640073	regulatory region 640073			611 bp proximal
Rr640074	regulatory region 640074			1242 bp proximal
Tssr2044	transcription start site region 2044			845 bp upstream
Tssr59337	transcription start site region 59337			133 bp upstream
Tssr59338	transcription start site region 59338			149 bp upstream
Tssr59339	transcription start site region 59339			187 bp upstream
Tssr59340	transcription start site region 59340			218 bp upstream
Tssr59341	transcription start site region 59341			802 bp upstream
Tssr59342	transcription start site region 59342			1200 bp upstream
Tssr63834	transcription start site region 63834			1579 bp upstream
Tssr63835	transcription start site region 63835			1516 bp upstream
Tssr63836	transcription start site region 63836			102 bp downstream
Tssr63837	transcription start site region 63837			135 bp downstream
Tssr63838	transcription start site region 63838			154 bp downstream
Tssr63839	transcription start site region 63839			208 bp downstream
Tssr63840	transcription start site region 63840			439 bp downstream
Tssr63841	transcription start site region 63841			512 bp downstream
Tssr63842	transcription start site region 63842			574 bp downstream
Wbp11	WW domain binding protein 11			Intron
				mRNA-UTR