rs29971862 SNP Detail

Summary

• ID
  rs29971862
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113368459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTG TCATCCTATA CACAACCTTG
  R
  CTTTATTATT TATCCCCAAA GACTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45880757	mCV22281425	ABI	CRAMUS_MOUSE	f	SNP		G					A
ss51841811	NES14761270	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	G	A	A	G		G	A	A	G		G
ss133564680	ENSMUSSNP4054163	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					A
ss321910741	CHEV_6_113341492	CHEVERUD	SCREENING_POP	f	SNP										A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29971862					SNP	G	G	A	G	A	G	A	A	G	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51841811	NES14761270	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113368459 () rs orientation: forward

Symbol	Name	Function Class
Arpc4	actin related protein 2/3 complex, subunit 4	1050 bp downstream
Cpgi17842	CpG island 17842	669 bp proximal
Rr636505	regulatory region 636505	542 bp proximal
Tssr58207	transcription start site region 58207	782 bp downstream
Tssr58208	transcription start site region 58208	919 bp upstream
Tssr58209	transcription start site region 58209	1012 bp upstream
Tssr58210	transcription start site region 58210	1564 bp upstream
Ttll3	tubulin tyrosine ligase-like family, member 3	within coordinates