rs29972099 SNP Detail

Summary

• ID
  rs29972099
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:62780765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGCCTC ACTCTGTAGC
  CCACACTGTC CTAGAATTCA GTTCATAGTT CAGGCTTGCC TAGAACTCAC GGTGGTCCTC
  CTGCCTCAGT TTCCTAGAAT TACAGTGCTT GGATTTCAGG TATGAGCCAC CACACTGGCT
  CAAACCTCCA AGAGTCATCT TATCATCGAA TCGACATCAA TGTTTGTCAG CTGGGTATTT
  W
  AAAAATTGTG TCCTTTTAAC ATGTTTCGGG AAAGGATTGT GAATTAGTCA GATTTCTGCA
  AGACTCTCAG TTTGCCTCCA TTGCCAGGAT CCCTTTTGAC CTGGGGTTTT TGGTTGCCAT
  TCAGGTGCCT TGACCATGGT GGGACCAGAG ACAAATATAT AATTTTATAA GATGCCTGAT
  TTTTTTCTGC TTGCAAAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47400119	NES11047953	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29972099					SNP	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47400119	NES11047953	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:62780765 () rs orientation: forward

Symbol	Name	Function Class
Nrp2	neuropilin 2	within coordinates
Tssr7018	transcription start site region 7018	1968 bp upstream