rs29972704 SNP Detail

Summary

• ID
  rs29972704
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30338925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTCGGTCACT TTGCTACATC CTTGGTTGCC CAAAGCCGTG TCTCCAGTGT CCACCACACT
  TGAATTCAAA CCCAAGGCCA GCTGCTTACA ATGGAGGAAA TCCATGATGG CTGATTTTAC
  CTCTCTGAGC TCCAGTTTCT TTATCTGAAA AACGGGCATC ATAATGCACT GTGGTTTATT
  TAGCATGGTG GATCTCAGCC TTCCAAATGC TGGAATCCTT TCCAAGCATA AAGGATTTTT
  TTGTTTGTTT GTTTTGTTTT TTGGGTTTTT TTGTTTGGTT TGGTTTTTGT TTTTTGGTTT
  K
  TTTTTTTGTT TGTTTGTTTG TTTGTTTTTG AGACAGGGTT TCTCTGTATA GCCCTGGCTG
  TCCTGGAACT CACTCTGTAG ACCAGGTTGG CCTCCAACTC AGAAATCCGC CTGCCTCTGC
  TTCCCGAGTG CTAGGATTAA AGGTGTGCGT CACCATGCCC GGCTGATAGT TATTTTTGTT
  GCTACTTCAT AACTGTGATT TTGCTGTTAT GATTTGTAAT ATCTATGTTT TCCTGTGGTC
  TTAGGTGACC CTGTGAAAGT GTCCTTTAGG CCCCAAAGGG TTGTGACCCC CTAGATTGAG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45382874	mCV25441970	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29972704					SNP	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30338925 () rs orientation: forward

Symbol	Name	Function Class
Ptpa	protein phosphatase 2 protein activator	1106 bp downstream
Rr554328	regulatory region 554328	849 bp distal
Rr554329	regulatory region 554329	1809 bp proximal