rs29972798 SNP Detail

Summary

• ID
  rs29972798
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106768524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCG GGTACTCAGA AGTGCACAGA
  R
  CCCTTAGGTT GCTGGGGTCC TTGTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46359510	mCV22323055	ABI	CRAMUS_MOUSE	f	SNP	A	A	A				G		G
ss47774670	NES11262115	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A		A	G	A	G		G	A	A	G		A
ss136941100	ENSMUSSNP1988635	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss323187632	CHEV_9_106793656	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29972798					SNP	A	A	A	A	A	A	G	A	G	A	G	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47774670	NES11262115	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106768524 () rs orientation: forward

Symbol	Name	Function Class
4930524O07Rik	RIKEN cDNA 4930524O07 gene	186 bp upstream
Cpgi22278	CpG island 22278	39 bp proximal
Dock3	dedicator of cyto-kinesis 3	1500 bp downstream
Manf	mesencephalic astrocyte-derived neurotrophic factor	within coordinates
Rr368849	regulatory region 368849	575 bp upstream
Rr686409	regulatory region 686409	within coordinates
Rr686410	regulatory region 686410	80 bp proximal
Rr686411	regulatory region 686411	462 bp proximal
Rr686412	regulatory region 686412	630 bp proximal
Rr686413	regulatory region 686413	644 bp proximal
Rr686414	regulatory region 686414	900 bp proximal
Tssr86942	transcription start site region 86942	1114 bp downstream
Tssr86943	transcription start site region 86943	789 bp upstream
Tssr86944	transcription start site region 86944	1125 bp upstream
Tssr86945	transcription start site region 86945	1151 bp upstream
Tssr91353	transcription start site region 91353	41 bp downstream
Tssr91354	transcription start site region 91354	55 bp downstream
Tssr91355	transcription start site region 91355	69 bp downstream
Tssr91356	transcription start site region 91356	76 bp downstream
Tssr91357	transcription start site region 91357	583 bp downstream
Tssr91358	transcription start site region 91358	606 bp downstream
Tssr91359	transcription start site region 91359	640 bp downstream